Variant report

Variant	rs55792858
Chromosome Location	chr15:92474196-92474197
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92474072..92476902-chr15:92480050..92482892,3	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs4078179	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55638463	0.92[EUR][1000 genomes]
rs55671921	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771916	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55772252	0.81[EUR][1000 genomes]
rs55829293	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55879752	0.95[EUR][1000 genomes]
rs56000392	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56040702	0.92[EUR][1000 genomes]
rs56079731	0.95[EUR][1000 genomes]
rs56100108	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56358895	0.95[EUR][1000 genomes]
rs56388730	0.95[EUR][1000 genomes]
rs61742322	0.92[EUR][1000 genomes]
rs6496879	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165108	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750081	0.81[EUR][1000 genomes]
rs72750089	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72750091	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72750094	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72750095	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72750097	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72750100	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72750101	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72751903	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72751904	0.95[EUR][1000 genomes]
rs72751905	0.95[EUR][1000 genomes]
rs72751967	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751974	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751975	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751979	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751987	1.00[ASN][1000 genomes]
rs72751990	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751992	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751994	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751997	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754003	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754005	1.00[ASN][1000 genomes]
rs8027174	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027910	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8034107	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92462800-92474400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:92462800-92482600	Weak transcription	HMEC	breast
3	chr15:92463800-92482400	Weak transcription	Esophagus	oesophagus
4	chr15:92464600-92483000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:92465200-92474800	Enhancers	Right Ventricle	heart
6	chr15:92466400-92482200	Weak transcription	Pancreas	Pancrea
7	chr15:92466800-92480200	Weak transcription	Fetal Brain Female	brain
8	chr15:92468000-92478800	Weak transcription	Lung	lung
9	chr15:92469200-92477400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:92469400-92483000	Weak transcription	Gastric	stomach
11	chr15:92469400-92485800	Weak transcription	Aorta	Aorta
12	chr15:92469600-92477200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:92470000-92474200	Weak transcription	Brain Angular Gyrus	brain
14	chr15:92470200-92474400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:92470200-92478000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr15:92470200-92478600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:92470400-92474400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr15:92470400-92483200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr15:92470600-92479800	Weak transcription	NHLF	lung
20	chr15:92470800-92474400	Weak transcription	Brain Substantia Nigra	brain
21	chr15:92470800-92478400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:92471000-92474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:92471000-92474200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr15:92471000-92475200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr15:92471000-92477200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr15:92471000-92478400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:92471200-92474200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr15:92471200-92483600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr15:92471400-92474200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr15:92471400-92475200	Enhancers	Fetal Brain Male	brain
31	chr15:92471600-92474200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr15:92471600-92474400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr15:92471800-92481400	Weak transcription	Brain Anterior Caudate	brain
34	chr15:92472200-92474400	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr15:92472400-92474400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr15:92472400-92475600	Enhancers	Fetal Heart	heart
37	chr15:92472600-92474200	Weak transcription	Brain Hippocampus Middle	brain
38	chr15:92472600-92475600	Weak transcription	Right Atrium	heart
39	chr15:92472600-92479200	Weak transcription	Ovary	ovary
40	chr15:92472800-92478600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr15:92472800-92482400	Weak transcription	Spleen	Spleen
42	chr15:92473200-92478400	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr15:92473400-92474600	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr15:92473600-92476400	Weak transcription	Left Ventricle	heart
45	chr15:92473600-92479800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:92473600-92483200	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr15:92473800-92475200	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr15:92473800-92475200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr15:92474000-92474600	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr15:92474000-92474800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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