Variant report

Variant	rs8027174
Chromosome Location	chr15:92484837-92484838
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92484652..92487230-chr15:92487270..92491872,4	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11853482	0.80[EUR][1000 genomes]
rs12443009	1.00[CHB][hapmap]
rs16946175	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs16946188	0.84[CEU][hapmap]
rs17596562	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs17596569	0.81[EUR][1000 genomes]
rs4078179	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs55653850	0.81[EUR][1000 genomes]
rs55671921	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55713569	0.91[EUR][1000 genomes]
rs55761412	0.81[EUR][1000 genomes]
rs55767000	0.81[EUR][1000 genomes]
rs55771916	1.00[ASN][1000 genomes]
rs55772252	0.83[EUR][1000 genomes]
rs55792858	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55829293	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55888073	0.81[EUR][1000 genomes]
rs55915922	0.91[EUR][1000 genomes]
rs55934923	0.81[EUR][1000 genomes]
rs56000392	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56016534	0.81[EUR][1000 genomes]
rs56085012	0.81[EUR][1000 genomes]
rs56100108	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56168257	0.81[EUR][1000 genomes]
rs56279925	0.81[EUR][1000 genomes]
rs57583649	0.84[EUR][1000 genomes]
rs6496879	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165108	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72750065	0.81[EUR][1000 genomes]
rs72750067	0.81[EUR][1000 genomes]
rs72750081	0.83[EUR][1000 genomes]
rs72751903	0.85[EUR][1000 genomes]
rs72751967	1.00[ASN][1000 genomes]
rs72751974	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751975	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751979	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751987	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751990	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751992	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751994	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751997	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754003	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754005	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754006	0.94[EUR][1000 genomes]
rs72754008	0.94[EUR][1000 genomes]
rs72754010	0.94[EUR][1000 genomes]
rs72754011	0.94[EUR][1000 genomes]
rs72754013	0.94[EUR][1000 genomes]
rs72754014	0.94[EUR][1000 genomes]
rs72754015	0.94[EUR][1000 genomes]
rs72754017	0.94[EUR][1000 genomes]
rs72754018	0.92[EUR][1000 genomes]
rs72754019	0.94[EUR][1000 genomes]
rs72754021	0.91[EUR][1000 genomes]
rs72754023	0.92[EUR][1000 genomes]
rs72754086	0.87[EUR][1000 genomes]
rs72754089	0.81[EUR][1000 genomes]
rs72754091	0.81[EUR][1000 genomes]
rs72754092	0.81[EUR][1000 genomes]
rs72755606	0.81[EUR][1000 genomes]
rs72755608	0.81[EUR][1000 genomes]
rs72755613	0.81[EUR][1000 genomes]
rs72755617	0.81[EUR][1000 genomes]
rs8027910	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8034107	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92469400-92485800	Weak transcription	Aorta	Aorta
2	chr15:92478800-92488000	Enhancers	Fetal Heart	heart
3	chr15:92479000-92491200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr15:92479200-92485000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:92479400-92485000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr15:92479800-92486000	Enhancers	Brain Hippocampus Middle	brain
7	chr15:92480200-92485000	Weak transcription	NHLF	lung
8	chr15:92480600-92485000	Weak transcription	Adipose Nuclei	Adipose
9	chr15:92480600-92485600	Weak transcription	Fetal Brain Female	brain
10	chr15:92480600-92485600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:92480600-92485600	Weak transcription	Psoas Muscle	Psoas
12	chr15:92480600-92486000	Weak transcription	HSMMtube	muscle
13	chr15:92480800-92485000	Weak transcription	Fetal Muscle Leg	muscle
14	chr15:92480800-92485800	Weak transcription	Fetal Brain Male	brain
15	chr15:92481800-92485000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr15:92481800-92486000	Enhancers	Right Atrium	heart
17	chr15:92481800-92492600	Enhancers	Right Ventricle	heart
18	chr15:92482000-92488200	Enhancers	Left Ventricle	heart
19	chr15:92482200-92485400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr15:92482200-92486400	Enhancers	Pancreas	Pancrea
21	chr15:92482200-92487200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:92482200-92492400	Enhancers	Brain Substantia Nigra	brain
23	chr15:92482400-92485000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr15:92482600-92485000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr15:92482600-92485000	Enhancers	HMEC	breast
26	chr15:92482600-92485400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:92482600-92485800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr15:92482600-92486000	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr15:92482600-92486400	Enhancers	Lung	lung
30	chr15:92482600-92488000	Enhancers	Ovary	ovary
31	chr15:92482600-92488000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr15:92482600-92491800	Enhancers	Placenta	Placenta
33	chr15:92482800-92485200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:92482800-92485600	Enhancers	A549	lung
35	chr15:92482800-92486000	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr15:92482800-92488200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr15:92483000-92485400	Enhancers	H1 Cell Line	embryonic stem cell
38	chr15:92483000-92485600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr15:92483000-92486000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr15:92483000-92486000	Enhancers	Brain Cingulate Gyrus	brain
41	chr15:92483000-92487200	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr15:92483000-92487800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr15:92483200-92485800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:92483200-92485800	Enhancers	Duodenum Mucosa	Duodenum
45	chr15:92483200-92486000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:92483200-92486000	Enhancers	NHEK	skin
47	chr15:92483200-92487200	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr15:92483200-92488200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:92483400-92485800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:92483400-92485800	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links