Variant report

Variant	rs72754010
Chromosome Location	chr15:92492895-92492896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92482980..92487918-chr15:92490119..92494508,7	MCF-7	breast:
2	chr15:92490131..92493308-chr15:92494366..92497413,4	MCF-7	breast:
3	chr15:92486176..92494051-chr15:92494562..92499303,11	MCF-7	breast:
4	chr15:92395542..92397748-chr15:92491402..92493035,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176463	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs16946175	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946188	1.00[ASN][1000 genomes]
rs17596562	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17596569	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28434706	1.00[ASN][1000 genomes]
rs4078179	1.00[AFR][1000 genomes]
rs55653850	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55671921	0.94[EUR][1000 genomes]
rs55713569	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55761412	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771916	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55829293	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55888073	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55915922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55934923	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56000392	0.94[EUR][1000 genomes]
rs56016534	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56085012	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56100108	0.94[EUR][1000 genomes]
rs56168257	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56279925	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57583649	0.90[EUR][1000 genomes]
rs6496879	0.94[EUR][1000 genomes]
rs72750089	1.00[AFR][1000 genomes]
rs72750094	1.00[AFR][1000 genomes]
rs72750095	1.00[AFR][1000 genomes]
rs72750097	1.00[AFR][1000 genomes]
rs72750100	1.00[AFR][1000 genomes]
rs72750101	1.00[AFR][1000 genomes]
rs72751903	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72751967	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72751974	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72751975	0.83[AMR][1000 genomes]
rs72751979	0.87[AMR][1000 genomes]
rs72751987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72751990	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72751992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72751994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72751997	0.94[EUR][1000 genomes]
rs72754003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72754005	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72754006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754015	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754021	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72754086	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754088	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754089	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754091	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754092	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754094	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755606	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755608	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755613	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755617	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027174	0.94[EUR][1000 genomes]
rs8027910	0.94[EUR][1000 genomes]
rs8034107	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92485200-92493800	Enhancers	Esophagus	oesophagus
2	chr15:92486800-92493400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr15:92486800-92493800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr15:92486800-92493800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:92486800-92495600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr15:92487200-92496200	Weak transcription	Fetal Thymus	thymus
7	chr15:92487200-92496800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr15:92488000-92493800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:92489200-92493000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr15:92489200-92493800	Enhancers	Lung	lung
11	chr15:92489200-92494600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr15:92489200-92494800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr15:92489200-92499400	Enhancers	Brain Hippocampus Middle	brain
14	chr15:92489400-92493800	Enhancers	Pancreas	Pancrea
15	chr15:92489400-92494600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:92490000-92498200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:92490200-92493000	Enhancers	Stomach Mucosa	stomach
18	chr15:92490200-92498000	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr15:92490800-92493800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:92491000-92493400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr15:92491200-92494400	Enhancers	Fetal Heart	heart
22	chr15:92491200-92499000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr15:92491400-92493200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr15:92491400-92493200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr15:92491400-92493400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr15:92491600-92494400	Weak transcription	Fetal Brain Male	brain
27	chr15:92491600-92494600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr15:92491600-92498000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:92491600-92500600	Weak transcription	Psoas Muscle	Psoas
30	chr15:92491800-92493400	Weak transcription	Placenta	Placenta
31	chr15:92491800-92493800	Weak transcription	Small Intestine	intestine
32	chr15:92491800-92494200	Weak transcription	Colon Smooth Muscle	Colon
33	chr15:92491800-92496600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:92491800-92499000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr15:92492000-92493200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:92492000-92493200	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr15:92492000-92493200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr15:92492000-92493200	Weak transcription	Adipose Nuclei	Adipose
39	chr15:92492000-92493400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr15:92492000-92493400	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr15:92492000-92493400	Weak transcription	Fetal Lung	lung
42	chr15:92492000-92494600	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr15:92492000-92496000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr15:92492000-92496400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr15:92492000-92497200	Weak transcription	Fetal Intestine Small	intestine
46	chr15:92492000-92497600	Weak transcription	Colonic Mucosa	Colon
47	chr15:92492000-92499200	Weak transcription	Aorta	Aorta
48	chr15:92492000-92499200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr15:92492000-92499400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:92492000-92499400	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links