Variant report

Variant	rs55671921
Chromosome Location	chr15:92488723-92488724
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92486176..92494051-chr15:92494562..92499303,11	MCF-7	breast:
2	chr15:92488195..92489990-chr15:92496310..92499101,2	MCF-7	breast:
3	chr15:92484652..92487230-chr15:92487270..92491872,4	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11853482	0.80[EUR][1000 genomes]
rs16946175	0.81[EUR][1000 genomes]
rs17596562	0.81[EUR][1000 genomes]
rs17596569	0.81[EUR][1000 genomes]
rs55653850	0.81[EUR][1000 genomes]
rs55713569	0.91[EUR][1000 genomes]
rs55761412	0.81[EUR][1000 genomes]
rs55767000	0.81[EUR][1000 genomes]
rs55771916	1.00[ASN][1000 genomes]
rs55772252	0.83[EUR][1000 genomes]
rs55792858	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55829293	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55888073	0.81[EUR][1000 genomes]
rs55915922	0.91[EUR][1000 genomes]
rs55934923	0.81[EUR][1000 genomes]
rs56000392	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56016534	0.81[EUR][1000 genomes]
rs56085012	0.81[EUR][1000 genomes]
rs56100108	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56168257	0.81[EUR][1000 genomes]
rs56279925	0.81[EUR][1000 genomes]
rs57583649	0.84[EUR][1000 genomes]
rs6496879	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165108	1.00[ASN][1000 genomes]
rs72750065	0.81[EUR][1000 genomes]
rs72750067	0.81[EUR][1000 genomes]
rs72750081	0.83[EUR][1000 genomes]
rs72751903	0.85[EUR][1000 genomes]
rs72751967	1.00[ASN][1000 genomes]
rs72751974	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751975	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751979	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751987	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751990	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751992	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751994	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751997	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754003	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754005	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754006	0.94[EUR][1000 genomes]
rs72754008	0.94[EUR][1000 genomes]
rs72754010	0.94[EUR][1000 genomes]
rs72754011	0.94[EUR][1000 genomes]
rs72754013	0.94[EUR][1000 genomes]
rs72754014	0.94[EUR][1000 genomes]
rs72754015	0.94[EUR][1000 genomes]
rs72754017	0.94[EUR][1000 genomes]
rs72754018	0.92[EUR][1000 genomes]
rs72754019	0.94[EUR][1000 genomes]
rs72754021	0.91[EUR][1000 genomes]
rs72754023	0.92[EUR][1000 genomes]
rs72754086	0.87[EUR][1000 genomes]
rs72754089	0.81[EUR][1000 genomes]
rs72754091	0.81[EUR][1000 genomes]
rs72754092	0.81[EUR][1000 genomes]
rs72755606	0.81[EUR][1000 genomes]
rs72755608	0.81[EUR][1000 genomes]
rs72755613	0.81[EUR][1000 genomes]
rs72755617	0.81[EUR][1000 genomes]
rs8027174	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027910	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8034107	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92479000-92491200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:92481800-92492600	Enhancers	Right Ventricle	heart
3	chr15:92482200-92492400	Enhancers	Brain Substantia Nigra	brain
4	chr15:92482600-92491800	Enhancers	Placenta	Placenta
5	chr15:92484800-92490000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:92484800-92490400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr15:92484800-92490400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:92485000-92492000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr15:92485200-92490000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:92485200-92490400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:92485200-92493800	Enhancers	Esophagus	oesophagus
12	chr15:92486000-92489200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr15:92486000-92490200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:92486200-92489400	Weak transcription	Gastric	stomach
15	chr15:92486400-92490200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr15:92486400-92490400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr15:92486400-92490400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:92486600-92489800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:92486600-92491400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr15:92486800-92491600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr15:92486800-92493400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr15:92486800-92493800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr15:92486800-92493800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:92486800-92495600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr15:92487000-92489400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr15:92487000-92489400	Weak transcription	Small Intestine	intestine
27	chr15:92487000-92490000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:92487000-92491600	Weak transcription	Osteobl	bone
29	chr15:92487200-92489200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr15:92487200-92489200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:92487200-92489400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:92487200-92489400	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr15:92487200-92489600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr15:92487200-92490000	Weak transcription	Fetal Brain Male	brain
35	chr15:92487200-92490200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr15:92487200-92490400	Weak transcription	Liver	Liver
37	chr15:92487200-92490800	Enhancers	Hela-S3	cervix
38	chr15:92487200-92491200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr15:92487200-92491400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:92487200-92491800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:92487200-92496200	Weak transcription	Fetal Thymus	thymus
42	chr15:92487200-92496800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr15:92487400-92490200	Weak transcription	Fetal Intestine Large	intestine
44	chr15:92487400-92491000	Weak transcription	Colon Smooth Muscle	Colon
45	chr15:92487400-92492600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr15:92487600-92490200	Weak transcription	Stomach Mucosa	stomach
47	chr15:92487600-92491000	Weak transcription	Colonic Mucosa	Colon
48	chr15:92487600-92491400	Weak transcription	Aorta	Aorta
49	chr15:92487800-92488800	Weak transcription	Spleen	Spleen
50	chr15:92487800-92489000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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