Variant report

Variant	rs17596569
Chromosome Location	chr15:92509922-92509923
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92489785..92491813-chr15:92508129..92510292,2	MCF-7	breast:
2	chr15:92509475..92511121-chr15:92515975..92518365,2	MCF-7	breast:
3	chr15:92509487..92513090-chr15:92516971..92519490,3	MCF-7	breast:
4	chr15:92509773..92512510-chr15:92514174..92516460,3	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs16946175	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946188	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17596562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28434706	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55653850	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55671921	0.81[EUR][1000 genomes]
rs55713569	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55761412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55888073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55915922	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55934923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56000392	0.81[EUR][1000 genomes]
rs56016534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56085012	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56100108	0.81[EUR][1000 genomes]
rs56168257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56279925	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6496879	0.81[EUR][1000 genomes]
rs72751990	0.81[EUR][1000 genomes]
rs72751992	0.81[EUR][1000 genomes]
rs72751994	0.81[EUR][1000 genomes]
rs72751997	0.81[EUR][1000 genomes]
rs72754003	0.81[EUR][1000 genomes]
rs72754005	0.81[EUR][1000 genomes]
rs72754006	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754008	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754010	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754011	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754013	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754014	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754015	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754017	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754018	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754019	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754021	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754023	0.88[EUR][1000 genomes]
rs72754086	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754088	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754089	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754092	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754094	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027174	0.81[EUR][1000 genomes]
rs8027910	0.81[EUR][1000 genomes]
rs8034107	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92498200-92555000	Weak transcription	Gastric	stomach
2	chr15:92506000-92513600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr15:92506000-92517600	Weak transcription	Colonic Mucosa	Colon
4	chr15:92507600-92510200	Enhancers	Right Ventricle	heart
5	chr15:92507600-92510400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:92507600-92512200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr15:92507600-92514400	Enhancers	Fetal Heart	heart
8	chr15:92507600-92516400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:92507800-92510200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr15:92507800-92510400	Enhancers	Left Ventricle	heart
11	chr15:92507800-92513200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr15:92508000-92514000	Enhancers	Brain Angular Gyrus	brain
13	chr15:92508000-92515000	Enhancers	Brain Cingulate Gyrus	brain
14	chr15:92508200-92510200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:92508200-92510200	Enhancers	HSMMtube	muscle
16	chr15:92508400-92510200	Flanking Active TSS	Hela-S3	cervix
17	chr15:92508400-92510200	Enhancers	NHDF-Ad	bronchial
18	chr15:92508600-92510000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr15:92508600-92514200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:92508600-92517600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr15:92508800-92510000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:92508800-92510200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:92508800-92514400	Enhancers	Ovary	ovary
24	chr15:92508800-92517600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr15:92509000-92512000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr15:92509000-92518400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr15:92509200-92510000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:92509200-92511200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr15:92509200-92511200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:92509200-92513600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr15:92509400-92510200	Enhancers	Psoas Muscle	Psoas
32	chr15:92509400-92511200	Weak transcription	Lung	lung
33	chr15:92509400-92511600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:92509600-92510200	Enhancers	Osteobl	bone
35	chr15:92509600-92510400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr15:92509600-92510400	Enhancers	NHEK	skin
37	chr15:92509600-92511200	Weak transcription	Aorta	Aorta
38	chr15:92509600-92511800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr15:92509600-92512800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr15:92509600-92512800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr15:92509600-92512800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr15:92509600-92513000	Weak transcription	NHLF	lung
43	chr15:92509600-92515400	Enhancers	Brain Substantia Nigra	brain
44	chr15:92509600-92519200	Enhancers	Brain Hippocampus Middle	brain
45	chr15:92509800-92510200	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr15:92509800-92510200	Enhancers	Muscle Satellite Cultured Cells	--
47	chr15:92509800-92510400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr15:92509800-92510400	Enhancers	A549	lung
49	chr15:92509800-92510800	Weak transcription	Spleen	Spleen
50	chr15:92509800-92511000	Weak transcription	Right Atrium	heart

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