Variant report

Variant	rs72754006
Chromosome Location	chr15:92490859-92490860
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92482980..92487918-chr15:92490119..92494508,7	MCF-7	breast:
2	chr15:92490131..92493308-chr15:92494366..92497413,4	MCF-7	breast:
3	chr15:92486176..92494051-chr15:92494562..92499303,11	MCF-7	breast:
4	chr15:92489785..92491813-chr15:92508129..92510292,2	MCF-7	breast:
5	chr15:92395904..92397967-chr15:92489405..92491043,2	MCF-7	breast:
6	chr15:92435577..92438094-chr15:92489816..92491916,2	MCF-7	breast:
7	chr15:92484652..92487230-chr15:92487270..92491872,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176463	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs16946175	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946188	1.00[ASN][1000 genomes]
rs17596562	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17596569	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28434706	1.00[ASN][1000 genomes]
rs4078179	1.00[AFR][1000 genomes]
rs55653850	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55671921	0.94[EUR][1000 genomes]
rs55713569	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55761412	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771916	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55829293	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55888073	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55915922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55934923	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56000392	0.94[EUR][1000 genomes]
rs56016534	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56085012	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56100108	0.94[EUR][1000 genomes]
rs56168257	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56279925	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57583649	0.87[EUR][1000 genomes]
rs6496879	0.94[EUR][1000 genomes]
rs72750089	1.00[AFR][1000 genomes]
rs72750094	1.00[AFR][1000 genomes]
rs72750095	1.00[AFR][1000 genomes]
rs72750097	1.00[AFR][1000 genomes]
rs72750100	1.00[AFR][1000 genomes]
rs72750101	1.00[AFR][1000 genomes]
rs72751903	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72751967	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72751974	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72751975	0.83[AMR][1000 genomes]
rs72751979	0.87[AMR][1000 genomes]
rs72751987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72751990	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72751992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72751994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72751997	0.94[EUR][1000 genomes]
rs72754003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72754005	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72754008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754015	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754021	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72754086	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754088	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754089	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754091	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754092	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754094	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755606	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755608	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755613	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755617	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027174	0.94[EUR][1000 genomes]
rs8027910	0.94[EUR][1000 genomes]
rs8034107	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92479000-92491200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:92481800-92492600	Enhancers	Right Ventricle	heart
3	chr15:92482200-92492400	Enhancers	Brain Substantia Nigra	brain
4	chr15:92482600-92491800	Enhancers	Placenta	Placenta
5	chr15:92485000-92492000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr15:92485200-92493800	Enhancers	Esophagus	oesophagus
7	chr15:92486600-92491400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:92486800-92491600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr15:92486800-92493400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr15:92486800-92493800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr15:92486800-92493800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:92486800-92495600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr15:92487000-92491600	Weak transcription	Osteobl	bone
14	chr15:92487200-92491200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr15:92487200-92491400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:92487200-92491800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:92487200-92496200	Weak transcription	Fetal Thymus	thymus
18	chr15:92487200-92496800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr15:92487400-92491000	Weak transcription	Colon Smooth Muscle	Colon
20	chr15:92487400-92492600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr15:92487600-92491000	Weak transcription	Colonic Mucosa	Colon
22	chr15:92487600-92491400	Weak transcription	Aorta	Aorta
23	chr15:92488000-92491200	Weak transcription	HSMMtube	muscle
24	chr15:92488000-92493800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:92488200-92491600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:92488600-92492400	Enhancers	Right Atrium	heart
27	chr15:92488600-92492600	Enhancers	Left Ventricle	heart
28	chr15:92488800-92492000	Enhancers	Brain Anterior Caudate	brain
29	chr15:92488800-92492600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
30	chr15:92488800-92492600	Enhancers	Spleen	Spleen
31	chr15:92489200-92491800	Enhancers	Primary hematopoietic stem cells	blood
32	chr15:92489200-92492000	Enhancers	Fetal Lung	lung
33	chr15:92489200-92492400	Enhancers	Brain Cingulate Gyrus	brain
34	chr15:92489200-92492800	Enhancers	H1 Cell Line	embryonic stem cell
35	chr15:92489200-92493000	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr15:92489200-92493800	Enhancers	Lung	lung
37	chr15:92489200-92494600	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr15:92489200-92494800	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr15:92489200-92499400	Enhancers	Brain Hippocampus Middle	brain
40	chr15:92489400-92491200	Enhancers	A549	lung
41	chr15:92489400-92491600	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr15:92489400-92491800	Enhancers	Small Intestine	intestine
43	chr15:92489400-92492000	Enhancers	Primary T cells fromperipheralblood	blood
44	chr15:92489400-92492200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr15:92489400-92492400	Enhancers	Ovary	ovary
46	chr15:92489400-92492400	Enhancers	NHLF	lung
47	chr15:92489400-92492600	Enhancers	Gastric	stomach
48	chr15:92489400-92493800	Enhancers	Pancreas	Pancrea
49	chr15:92489400-92494600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:92489600-92491000	Enhancers	Primary T helper cells PMA-I stimulated	--

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