Variant report

Variant	rs72751987
Chromosome Location	chr15:92482480-92482481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92474072..92476902-chr15:92480050..92482892,3	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs4078179	1.00[AFR][1000 genomes]
rs55671921	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55713569	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55771916	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55772252	0.80[EUR][1000 genomes]
rs55792858	1.00[ASN][1000 genomes]
rs55829293	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55915922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56000392	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56100108	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57583649	0.82[EUR][1000 genomes]
rs6496879	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165108	1.00[ASN][1000 genomes]
rs72750081	0.80[EUR][1000 genomes]
rs72750089	1.00[AFR][1000 genomes]
rs72750094	1.00[AFR][1000 genomes]
rs72750095	1.00[AFR][1000 genomes]
rs72750097	1.00[AFR][1000 genomes]
rs72750100	1.00[AFR][1000 genomes]
rs72750101	1.00[AFR][1000 genomes]
rs72751903	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72751967	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72751974	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72751975	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72751979	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72751990	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751997	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754005	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72754008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72754010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72754011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72754013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72754014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72754015	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72754017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72754018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72754019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72754021	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72754023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72754086	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8027174	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027910	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8034107	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92462800-92482600	Weak transcription	HMEC	breast
2	chr15:92464600-92483000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:92469400-92483000	Weak transcription	Gastric	stomach
4	chr15:92469400-92485800	Weak transcription	Aorta	Aorta
5	chr15:92470400-92483200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:92471200-92483600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:92473600-92483200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:92475400-92482600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:92475400-92483000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:92475400-92483000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:92475400-92484600	Weak transcription	Primary T cells from cord blood	blood
12	chr15:92477400-92483400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr15:92477600-92482800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:92477800-92482800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:92477800-92483200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:92478800-92488000	Enhancers	Fetal Heart	heart
17	chr15:92479000-92483000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:92479000-92483400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr15:92479000-92491200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr15:92479200-92482600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr15:92479200-92483000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr15:92479200-92483200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr15:92479200-92483400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr15:92479200-92485000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr15:92479400-92485000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr15:92479600-92483200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:92479800-92486000	Enhancers	Brain Hippocampus Middle	brain
28	chr15:92480200-92482800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr15:92480200-92483000	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr15:92480200-92483000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:92480200-92485000	Weak transcription	NHLF	lung
32	chr15:92480400-92483200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr15:92480600-92482600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr15:92480600-92483000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:92480600-92483000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr15:92480600-92483200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr15:92480600-92483200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr15:92480600-92483400	Weak transcription	Stomach Mucosa	stomach
39	chr15:92480600-92485000	Weak transcription	Adipose Nuclei	Adipose
40	chr15:92480600-92485600	Weak transcription	Fetal Brain Female	brain
41	chr15:92480600-92485600	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr15:92480600-92485600	Weak transcription	Psoas Muscle	Psoas
43	chr15:92480600-92486000	Weak transcription	HSMMtube	muscle
44	chr15:92480800-92482600	Weak transcription	Lung	lung
45	chr15:92480800-92482600	Weak transcription	Ovary	ovary
46	chr15:92480800-92482600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr15:92480800-92485000	Weak transcription	Fetal Muscle Leg	muscle
48	chr15:92480800-92485800	Weak transcription	Fetal Brain Male	brain
49	chr15:92481200-92482800	Weak transcription	Colonic Mucosa	Colon
50	chr15:92481200-92484200	Enhancers	Brain Angular Gyrus	brain

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