Variant report

Variant	rs55915922
Chromosome Location	chr15:92496233-92496234
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:92495489..92497057-chr15:92505044..92507956,2	MCF-7	breast:
2	chr15:92495196..92498509-chr15:92585959..92588143,4	MCF-7	breast:
3	chr15:92482666..92484901-chr15:92495644..92498156,3	MCF-7	breast:
4	chr15:92495221..92497782-chr15:92516330..92519314,2	MCF-7	breast:
5	chr15:92495971..92498057-chr15:92512992..92515927,3	MCF-7	breast:
6	chr15:92486176..92494051-chr15:92494562..92499303,11	MCF-7	breast:
7	chr15:92490131..92493308-chr15:92494366..92497413,4	MCF-7	breast:
8	chr15:92496027..92498083-chr15:92616983..92618525,2	MCF-7	breast:
9	chr15:92495579..92497655-chr15:92499848..92503443,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000176463	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs16946175	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946188	1.00[ASN][1000 genomes]
rs17596562	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17596569	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28434706	1.00[ASN][1000 genomes]
rs4078179	1.00[AFR][1000 genomes]
rs55653850	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55671921	0.91[EUR][1000 genomes]
rs55713569	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55761412	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771916	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55829293	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55888073	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55934923	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56000392	0.91[EUR][1000 genomes]
rs56016534	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56085012	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56100108	0.91[EUR][1000 genomes]
rs56168257	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56279925	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57583649	0.87[EUR][1000 genomes]
rs6496879	0.91[EUR][1000 genomes]
rs72750089	1.00[AFR][1000 genomes]
rs72750094	1.00[AFR][1000 genomes]
rs72750095	1.00[AFR][1000 genomes]
rs72750097	1.00[AFR][1000 genomes]
rs72750100	1.00[AFR][1000 genomes]
rs72750101	1.00[AFR][1000 genomes]
rs72751903	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72751967	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72751974	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72751975	0.83[AMR][1000 genomes]
rs72751979	0.87[AMR][1000 genomes]
rs72751987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72751990	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72751992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72751994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72751997	0.91[EUR][1000 genomes]
rs72754003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72754005	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72754006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754015	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754021	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72754086	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754088	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754089	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754091	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754092	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754094	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755606	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755608	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755613	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755617	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027174	0.91[EUR][1000 genomes]
rs8027910	0.91[EUR][1000 genomes]
rs8034107	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92487200-92496800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr15:92489200-92499400	Enhancers	Brain Hippocampus Middle	brain
3	chr15:92490000-92498200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:92490200-92498000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr15:92491200-92499000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr15:92491600-92498000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:92491600-92500600	Weak transcription	Psoas Muscle	Psoas
8	chr15:92491800-92496600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:92491800-92499000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:92492000-92496400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:92492000-92497200	Weak transcription	Fetal Intestine Small	intestine
12	chr15:92492000-92497600	Weak transcription	Colonic Mucosa	Colon
13	chr15:92492000-92499200	Weak transcription	Aorta	Aorta
14	chr15:92492000-92499200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr15:92492000-92499400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:92492000-92499400	Weak transcription	Brain Anterior Caudate	brain
17	chr15:92492200-92499000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:92492200-92499000	Weak transcription	Osteobl	bone
19	chr15:92492400-92498000	Weak transcription	Ovary	ovary
20	chr15:92492400-92499000	Enhancers	NHEK	skin
21	chr15:92492400-92499400	Weak transcription	NHLF	lung
22	chr15:92492600-92496600	Weak transcription	Gastric	stomach
23	chr15:92493000-92498000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr15:92493200-92498400	Enhancers	Primary T cells fromperipheralblood	blood
25	chr15:92493200-92498400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr15:92493200-92500200	Enhancers	HMEC	breast
27	chr15:92493400-92498400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr15:92493800-92496400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr15:92493800-92496400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr15:92493800-92496400	Weak transcription	Lung	lung
31	chr15:92493800-92496600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr15:92493800-92498200	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr15:92493800-92499000	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr15:92493800-92499200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:92493800-92499200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:92494000-92496800	Weak transcription	Right Ventricle	heart
37	chr15:92494000-92498200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:92494000-92499200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr15:92494000-92499400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr15:92494400-92499000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr15:92494400-92499000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr15:92494600-92497000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr15:92494600-92497800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr15:92494600-92499000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr15:92494600-92499000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr15:92494600-92499000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:92494600-92499200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr15:92494600-92499400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr15:92494800-92496400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:92494800-92499000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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