Variant report

Variant	rs72754086
Chromosome Location	chr15:92499448-92499449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs16946175	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16946188	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17596562	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17596569	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28434706	1.00[ASN][1000 genomes]
rs4078179	1.00[AFR][1000 genomes]
rs55653850	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55671921	0.87[EUR][1000 genomes]
rs55713569	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55761412	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771916	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs55829293	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs55888073	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55915922	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55934923	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56000392	0.87[EUR][1000 genomes]
rs56016534	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56085012	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56100108	0.87[EUR][1000 genomes]
rs56168257	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56279925	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57583649	0.83[EUR][1000 genomes]
rs6496879	0.87[EUR][1000 genomes]
rs72750089	1.00[AFR][1000 genomes]
rs72750094	1.00[AFR][1000 genomes]
rs72750095	1.00[AFR][1000 genomes]
rs72750097	1.00[AFR][1000 genomes]
rs72750100	1.00[AFR][1000 genomes]
rs72750101	1.00[AFR][1000 genomes]
rs72751903	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72751967	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72751974	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72751979	0.82[AMR][1000 genomes]
rs72751987	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72751990	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72751992	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72751994	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72751997	0.87[EUR][1000 genomes]
rs72754003	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72754005	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72754006	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754008	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754010	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754011	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754013	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754014	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754015	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754017	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754018	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754019	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754021	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754023	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72754088	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754089	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754091	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754092	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754094	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755606	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755608	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755613	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755617	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027174	0.87[EUR][1000 genomes]
rs8027910	0.87[EUR][1000 genomes]
rs8034107	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3387489	chr15:92499398-92501396	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92491600-92500600	Weak transcription	Psoas Muscle	Psoas
2	chr15:92493200-92500200	Enhancers	HMEC	breast
3	chr15:92495400-92505400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:92495600-92499600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr15:92496000-92499800	Enhancers	Fetal Heart	heart
6	chr15:92496000-92500800	Enhancers	Left Ventricle	heart
7	chr15:92496000-92500800	Enhancers	Right Atrium	heart
8	chr15:92496400-92500800	Enhancers	Lung	lung
9	chr15:92496800-92500200	Enhancers	Right Ventricle	heart
10	chr15:92497000-92499800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:92497000-92499800	Enhancers	Esophagus	oesophagus
12	chr15:92497000-92500000	Enhancers	Adipose Nuclei	Adipose
13	chr15:92497000-92500200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:92497600-92499600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:92498000-92500000	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr15:92498000-92500800	Enhancers	Ovary	ovary
17	chr15:92498000-92502200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:92498200-92499800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:92498200-92505200	Weak transcription	Colonic Mucosa	Colon
20	chr15:92498200-92555000	Weak transcription	Gastric	stomach
21	chr15:92498400-92505200	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr15:92498600-92499600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:92498600-92503000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr15:92498800-92500000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:92499000-92499600	Enhancers	Brain Cingulate Gyrus	brain
26	chr15:92499000-92499600	Flanking Active TSS	NHEK	skin
27	chr15:92499000-92499800	Enhancers	Placenta Amnion	Placenta Amnion
28	chr15:92499000-92499800	Enhancers	A549	lung
29	chr15:92499000-92500000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr15:92499000-92500000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr15:92499000-92500000	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr15:92499000-92500000	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr15:92499000-92500000	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr15:92499000-92500000	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr15:92499000-92500000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:92499000-92500000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr15:92499000-92500000	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr15:92499000-92500000	Enhancers	Osteobl	bone
39	chr15:92499000-92505200	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr15:92499200-92499600	Enhancers	Aorta	Aorta
41	chr15:92499200-92499800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:92499200-92499800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:92499200-92499800	Enhancers	Fetal Muscle Leg	muscle
44	chr15:92499200-92500000	Enhancers	H1 Cell Line	embryonic stem cell
45	chr15:92499200-92500000	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr15:92499200-92500000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr15:92499200-92500000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:92499200-92500000	Enhancers	Brain Substantia Nigra	brain
49	chr15:92499200-92500000	Enhancers	Fetal Brain Male	brain
50	chr15:92499200-92500000	Enhancers	NHDF-Ad	bronchial

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