Variant report

Variant	rs28481847
Chromosome Location	chr7:120101804-120101805
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10235142	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10235791	0.89[AMR][1000 genomes]
rs10238081	0.89[AMR][1000 genomes]
rs10238570	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10245828	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10251636	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10269236	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10281231	0.84[AFR][1000 genomes]
rs10488297	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12333476	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12333654	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs16870497	0.84[AMR][1000 genomes]
rs17142709	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17142758	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6977949	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7357187	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7800215	0.89[AMR][1000 genomes]
rs7809079	0.89[AMR][1000 genomes]
rs9656276	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9691272	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9691284	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9942620	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120099400-120102000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr7:120100400-120102400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:120101800-120117000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links