Variant report

Variant	rs7357187
Chromosome Location	chr7:120101185-120101186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10235142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235791	0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10238081	0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10238570	0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245828	0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10251636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10269236	0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs10281231	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10488297	0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333476	0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333654	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16870497	0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17142709	0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17142758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28481847	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4370473	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs6977949	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7787689	1.00[YRI][hapmap]
rs7800215	0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7809079	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9656276	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9691272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9691284	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9942620	0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120092000-120101200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:120098000-120101200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:120099200-120101800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:120099200-120101800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:120099400-120102000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:120100000-120101600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:120100200-120101600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:120100200-120101800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:120100400-120101600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:120100400-120102400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:120100800-120101800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:120101000-120101200	Flanking Active TSS	GM12878-XiMat	blood
13	chr7:120101000-120101400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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