Variant report

Variant	rs7809079
Chromosome Location	chr7:120037989-120037990
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10235142	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235791	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10238081	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10238570	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245828	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10251636	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10269236	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs10281231	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10488297	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333476	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333654	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16870497	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17142709	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17142758	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28481847	0.89[AMR][1000 genomes]
rs4370473	0.87[AFR][1000 genomes]
rs6977949	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7357187	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7800215	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9656276	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9691272	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9691284	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9942620	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024920	chr7:120002420-120083753	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120035800-120038000	Active TSS	GM12878-XiMat	blood
2	chr7:120036400-120041800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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