Variant report
| Variant | rs2849664 |
|---|---|
| Chromosome Location | chr21:28405921-28405922 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs233581 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs233582 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs233607 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs233611 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs233612 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs233613 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs233617 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs233618 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs233619 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs233620 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2830646 | 1.00[AFR][1000 genomes] |
| rs394909 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs413156 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs427577 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs447687 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs545278 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs572317 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs636516 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs652277 | 0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9978689 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1067475 | chr21:28238746-29046707 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 2 | esv2758532 | chr21:28380230-28540443 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 3 | esv2758817 | chr21:28380230-28540443 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 4 | nsv1066134 | chr21:28382038-28406482 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| 5 | nsv1055852 | chr21:28382038-28407515 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| 6 | nsv587341 | chr21:28391743-28419053 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:28351800-28416600 | Weak transcription | Ovary | ovary |
| 2 | chr21:28399200-28408200 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
