Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ADAMTS5-3	chr21:28410284-28414064	NONHSAT081559
2	lnc-ADAMTS5-3	chr21:28410288-28414064	ucscGeneNc_uc002yml_2

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17659214	0.82[AFR][1000 genomes]
rs233581	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs233582	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs233594	0.81[AFR][1000 genomes]
rs233607	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs233611	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs233612	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs233613	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs233617	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs233618	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs233619	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs233620	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2830646	0.85[AFR][1000 genomes]
rs2830690	0.88[GIH][hapmap]
rs2849664	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs394909	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs404112	0.83[EUR][1000 genomes]
rs410647	0.81[AFR][1000 genomes]
rs413156	0.98[EUR][1000 genomes]
rs427577	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs447687	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs545278	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs570331	0.88[AFR][1000 genomes]
rs572317	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs636516	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73187879	0.82[AFR][1000 genomes]
rs9978689	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067475	chr21:28238746-29046707	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2758532	chr21:28380230-28540443	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	esv2758817	chr21:28380230-28540443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv587341	chr21:28391743-28419053	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28351800-28416600	Weak transcription	Ovary	ovary
2	chr21:28409400-28415800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr21:28411800-28413400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search: