Variant report

Variant	rs427577
Chromosome Location	chr21:28413424-28413425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs233581	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs233582	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs233607	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs233609	0.82[AMR][1000 genomes]
rs233611	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs233612	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs233613	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs233617	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs233618	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs233619	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs233620	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2849664	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs394909	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs404112	0.80[EUR][1000 genomes]
rs413156	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs447687	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs545278	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs572317	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs636516	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs652277	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9978689	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067475	chr21:28238746-29046707	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2758532	chr21:28380230-28540443	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	esv2758817	chr21:28380230-28540443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv587341	chr21:28391743-28419053	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28351800-28416600	Weak transcription	Ovary	ovary
2	chr21:28409400-28415800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr21:28413000-28413800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr21:28413200-28413600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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