Variant report

Variant	rs28507639
Chromosome Location	chr4:121778956-121778957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10049892	0.86[AFR][1000 genomes]
rs11935624	0.86[AFR][1000 genomes]
rs11937920	0.86[AFR][1000 genomes]
rs28595368	1.00[AFR][1000 genomes]
rs28641847	0.86[AFR][1000 genomes]
rs28678953	1.00[AFR][1000 genomes]
rs28813423	0.86[AFR][1000 genomes]
rs9991843	0.86[AFR][1000 genomes]
rs9992480	1.00[AFR][1000 genomes]
rs9997435	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121756800-121779800	Weak transcription	Aorta	Aorta
2	chr4:121761200-121783600	Weak transcription	Pancreas	Pancrea
3	chr4:121765800-121786600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:121766000-121786600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:121766200-121790800	Weak transcription	Ovary	ovary
6	chr4:121769000-121779600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:121769200-121779600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr4:121771400-121781200	Weak transcription	HSMM	muscle
9	chr4:121771600-121783200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:121771800-121779600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:121771800-121786800	Weak transcription	Fetal Lung	lung
12	chr4:121774400-121780400	Enhancers	NHDF-Ad	bronchial
13	chr4:121775200-121779200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:121775200-121790800	Weak transcription	Fetal Kidney	kidney
15	chr4:121775400-121780000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr4:121776800-121779400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:121777000-121783600	Weak transcription	Fetal Intestine Small	intestine
18	chr4:121778600-121779200	Enhancers	NHLF	lung
19	chr4:121778600-121780200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:121778800-121779000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr4:121778800-121779200	Weak transcription	Fetal Heart	heart

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