Variant report

Variant	rs9997435
Chromosome Location	chr4:121776394-121776395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:121769272..121771821-chr4:121774320..121777055,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10049892	0.86[AFR][1000 genomes]
rs11935624	1.00[ASW][hapmap];1.00[LWK][hapmap];0.86[AFR][1000 genomes]
rs11937920	0.86[AFR][1000 genomes]
rs17051247	1.00[CHD][hapmap]
rs28507639	1.00[AFR][1000 genomes]
rs28595368	1.00[AFR][1000 genomes]
rs28641847	0.86[AFR][1000 genomes]
rs28678953	1.00[AFR][1000 genomes]
rs28813423	0.86[AFR][1000 genomes]
rs9991843	0.86[AFR][1000 genomes]
rs9992480	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121756800-121779800	Weak transcription	Aorta	Aorta
2	chr4:121761200-121778200	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:121761200-121783600	Weak transcription	Pancreas	Pancrea
4	chr4:121761400-121777600	Weak transcription	Left Ventricle	heart
5	chr4:121763400-121778800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:121763600-121776600	Weak transcription	Fetal Stomach	stomach
7	chr4:121763800-121776600	Weak transcription	Fetal Heart	heart
8	chr4:121765800-121786600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:121766000-121776600	Weak transcription	Fetal Intestine Small	intestine
10	chr4:121766000-121786600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:121766200-121790800	Weak transcription	Ovary	ovary
12	chr4:121766400-121776600	Weak transcription	Fetal Intestine Large	intestine
13	chr4:121769000-121779600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:121769200-121779600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr4:121771000-121777000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:121771400-121781200	Weak transcription	HSMM	muscle
17	chr4:121771600-121783200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr4:121771800-121779600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:121771800-121786800	Weak transcription	Fetal Lung	lung
20	chr4:121774400-121776800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:121774400-121780400	Enhancers	NHDF-Ad	bronchial
22	chr4:121774800-121778600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:121774800-121778600	Weak transcription	NHLF	lung
24	chr4:121775200-121779200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:121775200-121790800	Weak transcription	Fetal Kidney	kidney
26	chr4:121775400-121780000	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links