Variant report

Variant	rs28678953
Chromosome Location	chr4:121780812-121780813
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10049892	0.86[AFR][1000 genomes]
rs11935624	0.86[AFR][1000 genomes]
rs11937920	0.86[AFR][1000 genomes]
rs28507639	1.00[AFR][1000 genomes]
rs28595368	1.00[AFR][1000 genomes]
rs28641847	0.86[AFR][1000 genomes]
rs28813423	0.86[AFR][1000 genomes]
rs9991843	0.86[AFR][1000 genomes]
rs9992480	1.00[AFR][1000 genomes]
rs9997435	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121761200-121783600	Weak transcription	Pancreas	Pancrea
2	chr4:121765800-121786600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:121766000-121786600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:121766200-121790800	Weak transcription	Ovary	ovary
5	chr4:121771400-121781200	Weak transcription	HSMM	muscle
6	chr4:121771600-121783200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:121771800-121786800	Weak transcription	Fetal Lung	lung
8	chr4:121775200-121790800	Weak transcription	Fetal Kidney	kidney
9	chr4:121777000-121783600	Weak transcription	Fetal Intestine Small	intestine
10	chr4:121779800-121786400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:121780000-121786600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:121780200-121786800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr4:121780200-121790600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:121780600-121787000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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