Variant report
| Variant | rs28520865 |
|---|---|
| Chromosome Location | chr2:180680489-180680490 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10930887 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1352111 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1383413 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs165373 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs165374 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs165379 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs165380 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs165381 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs187745 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs194674 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs259831 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs259833 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2630539 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs357711 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs357712 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs55869281 | 0.96[ASN][1000 genomes] |
| rs56388438 | 0.97[ASN][1000 genomes] |
| rs6752731 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7557122 | 0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7597666 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002305 | chr2:180568558-180812846 | Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv428731 | chr2:180629389-180805171 | Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:180679200-180682400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
