Variant report

Variant	rs55869281
Chromosome Location	chr2:180684788-180684789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12328338	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13418648	0.82[EUR][1000 genomes]
rs1486233	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs165373	0.94[ASN][1000 genomes]
rs165374	0.88[ASN][1000 genomes]
rs16867045	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2219670	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28520865	0.96[ASN][1000 genomes]
rs56152328	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56388438	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6433810	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6433811	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6752731	0.94[ASN][1000 genomes]
rs7557122	0.96[ASN][1000 genomes]
rs7585592	0.82[AMR][1000 genomes]
rs7597666	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428731	chr2:180629389-180805171	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180682800-180686800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:180682800-180688400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:180682800-180690400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:180683200-180690400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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