Variant report

Variant	rs28521097
Chromosome Location	chr8:9919488-9919489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9918343..9921337-chr8:9921540..9924718,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28706097	1.00[AMR][1000 genomes]
rs486885	1.00[AMR][1000 genomes]
rs542203	1.00[AMR][1000 genomes]
rs578685	1.00[AMR][1000 genomes]
rs589424	1.00[AMR][1000 genomes]
rs6601394	1.00[AMR][1000 genomes]
rs660923	1.00[AMR][1000 genomes]
rs670475	1.00[AMR][1000 genomes]
rs6984048	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv869934	chr8:9806639-9940586	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv890343	chr8:9888729-9932797	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1018236	chr8:9915428-9940481	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9913000-9933400	Weak transcription	Gastric	stomach
2	chr8:9913200-9921000	Weak transcription	Fetal Stomach	stomach
3	chr8:9913200-9922000	Weak transcription	Esophagus	oesophagus
4	chr8:9913200-9926600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:9913200-9927600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr8:9913200-9929200	Weak transcription	Aorta	Aorta
7	chr8:9913200-9933600	Weak transcription	Pancreas	Pancrea
8	chr8:9913200-9944800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:9913400-9921200	Weak transcription	Adipose Nuclei	Adipose
10	chr8:9913400-9928000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr8:9913400-9930600	Weak transcription	Fetal Intestine Small	intestine
12	chr8:9913400-9935800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:9913600-9920400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr8:9913600-9938600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr8:9913800-9922600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:9914000-9929600	Weak transcription	Primary B cells from cord blood	blood
17	chr8:9914800-9947200	Weak transcription	Left Ventricle	heart
18	chr8:9915200-9919600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr8:9915400-9919600	Weak transcription	Primary T cells from cord blood	blood
20	chr8:9915400-9922400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr8:9915400-9922400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:9917800-9921600	Weak transcription	Liver	Liver
23	chr8:9919200-9919800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr8:9919200-9920200	Enhancers	Fetal Muscle Leg	muscle
25	chr8:9919400-9919800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr8:9919400-9919800	Enhancers	Fetal Muscle Trunk	muscle
27	chr8:9919400-9919800	Enhancers	Lung	lung
28	chr8:9919400-9919800	Enhancers	HSMM	muscle
29	chr8:9919400-9920000	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr8:9919400-9920200	Enhancers	Spleen	Spleen

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