Variant report

Variant	rs2852720
Chromosome Location	chr1:159060560-159060561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:159057678..159060564-chr1:159061806..159064671,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1011116	0.85[JPT][hapmap]
rs1614254	0.85[JPT][hapmap]
rs16841532	0.86[JPT][hapmap]
rs16841571	0.85[JPT][hapmap]
rs16841659	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1772413	0.85[JPT][hapmap]
rs2078724	0.83[EUR][1000 genomes]
rs2276405	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2518561	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs3754459	0.85[JPT][hapmap]
rs56338583	0.90[ASN][1000 genomes]
rs60720528	0.90[ASN][1000 genomes]
rs855870	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs855873	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs855874	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872486	chr1:158979191-159090256	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159051200-159063400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:159053600-159061400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:159055600-159062200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr1:159055800-159061600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:159056200-159063400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:159056600-159060600	Weak transcription	Spleen	Spleen
7	chr1:159057400-159062800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:159057600-159060600	Enhancers	HMEC	breast
9	chr1:159057800-159061000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:159057800-159061000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:159057800-159061000	Enhancers	NHEK	skin
12	chr1:159057800-159061200	Enhancers	Hela-S3	cervix
13	chr1:159057800-159061400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:159057800-159062600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:159058400-159060600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:159058400-159061200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:159058600-159060600	Weak transcription	NH-A	brain
18	chr1:159058600-159061400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:159058800-159060600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:159058800-159061400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr1:159059400-159060600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr1:159059400-159062600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:159059800-159060600	Weak transcription	Primary B cells from cord blood	blood
24	chr1:159059800-159060600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr1:159059800-159061400	Enhancers	NHDF-Ad	bronchial
26	chr1:159060000-159061600	Weak transcription	Esophagus	oesophagus
27	chr1:159060000-159062600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr1:159060200-159060800	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr1:159060400-159061200	Enhancers	Osteobl	bone
30	chr1:159060400-159061400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr1:159060400-159061400	Enhancers	NHLF	lung
32	chr1:159060400-159062600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:159060400-159062600	Enhancers	HSMM	muscle
34	chr1:159060400-159062800	Enhancers	HUVEC	blood vessel

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