Variant report

Variant	rs16841659
Chromosome Location	chr1:159053650-159053651
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1011116	0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs10489845	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11265129	0.86[EUR][1000 genomes]
rs12057410	1.00[EUR][1000 genomes]
rs12088214	1.00[EUR][1000 genomes]
rs1614254	0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs16841532	0.82[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs16841571	0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs1772413	0.82[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs2276405	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2852720	0.85[ASN][1000 genomes]
rs3754459	0.82[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap]
rs41304265	0.83[EUR][1000 genomes]
rs56338583	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60720528	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74122255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs855870	0.86[ASN][1000 genomes]
rs855874	0.92[ASN][1000 genomes]
rs856045	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872486	chr1:158979191-159090256	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159038600-159056400	Weak transcription	Spleen	Spleen
2	chr1:159049600-159058000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:159051200-159063400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:159052400-159056400	Enhancers	Primary B cells from cord blood	blood
5	chr1:159053600-159054400	Enhancers	Primary hematopoietic stem cells	blood
6	chr1:159053600-159055000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:159053600-159055400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr1:159053600-159055600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr1:159053600-159055600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:159053600-159061400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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