Variant report

Variant	rs855874
Chromosome Location	chr1:159048847-159048848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10489845	0.81[ASN][1000 genomes]
rs16841659	0.92[ASN][1000 genomes]
rs2276405	0.86[ASN][1000 genomes]
rs2518561	0.85[EUR][1000 genomes]
rs2852720	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56338583	0.87[ASN][1000 genomes]
rs60720528	0.87[ASN][1000 genomes]
rs74122255	0.86[ASN][1000 genomes]
rs855870	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs855873	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872486	chr1:158979191-159090256	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159038600-159056400	Weak transcription	Spleen	Spleen
2	chr1:159046400-159049400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:159046800-159049400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:159047000-159051000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:159048000-159051000	Weak transcription	NHDF-Ad	bronchial
6	chr1:159048000-159053600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr1:159048200-159049000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr1:159048200-159053600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr1:159048400-159052400	Weak transcription	Primary B cells from cord blood	blood
10	chr1:159048800-159051200	Weak transcription	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links