Variant report

Variant	rs28528105
Chromosome Location	chr4:130758159-130758160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11931514	0.84[AFR][1000 genomes]
rs11932507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11939476	0.99[AFR][1000 genomes]
rs11940610	0.84[AFR][1000 genomes]
rs28460321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28698400	0.82[AFR][1000 genomes]
rs28727325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28734986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55645832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73848408	0.96[AFR][1000 genomes]
rs73848413	0.96[AFR][1000 genomes]
rs73848414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7685354	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428770	chr4:130692631-130863832	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1023482	chr4:130737503-130783577	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv523994	chr4:130738623-130774012	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1029003	chr4:130740015-130767559	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1019516	chr4:130754819-130976202	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130757600-130758400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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