Variant report

Variant	rs11939476
Chromosome Location	chr4:130774879-130774880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11931514	0.83[AFR][1000 genomes]
rs11932507	0.99[AFR][1000 genomes]
rs11940610	0.83[AFR][1000 genomes]
rs28460321	0.99[AFR][1000 genomes]
rs28528105	0.99[AFR][1000 genomes]
rs28698400	0.81[AFR][1000 genomes]
rs28727307	0.81[AFR][1000 genomes]
rs28727325	0.99[AFR][1000 genomes]
rs28734986	0.99[AFR][1000 genomes]
rs55645832	0.99[AFR][1000 genomes]
rs73848408	0.95[AFR][1000 genomes]
rs73848413	0.95[AFR][1000 genomes]
rs73848414	0.99[AFR][1000 genomes]
rs7685354	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9999245	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428770	chr4:130692631-130863832	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1023482	chr4:130737503-130783577	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1019516	chr4:130754819-130976202	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130773400-130775200	Enhancers	HepG2	liver
2	chr4:130774600-130775200	Active TSS	Hela-S3	cervix
3	chr4:130774800-130775400	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr4:130774800-130775400	Active TSS	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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