Variant report

Variant	rs11940610
Chromosome Location	chr4:130758570-130758571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C4orf33-1	chr4:130758526-130758580	ENSG00000249618.1
2	lnc-C4orf33-1	chr4:130758516-130758580	ENSG00000249618.1
3	lnc-C4orf33-1	chr4:130758526-130758580	NONHSAT098298

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10028795	0.81[ASN][1000 genomes]
rs10518554	0.81[ASN][1000 genomes]
rs11930735	0.81[ASN][1000 genomes]
rs11931514	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11932507	0.84[AFR][1000 genomes]
rs11939476	0.83[AFR][1000 genomes]
rs12648472	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2391539	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28460321	0.84[AFR][1000 genomes]
rs28528105	0.84[AFR][1000 genomes]
rs28698400	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28727307	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28727325	0.84[AFR][1000 genomes]
rs28734986	0.84[AFR][1000 genomes]
rs2893306	0.81[ASN][1000 genomes]
rs4512011	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55645832	0.84[AFR][1000 genomes]
rs58544621	0.81[ASN][1000 genomes]
rs59382846	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60882021	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72615856	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72615857	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72615858	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72615859	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72615861	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72615864	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72615865	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72618851	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72618852	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72618853	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73848408	0.80[AFR][1000 genomes]
rs73848413	0.80[AFR][1000 genomes]
rs73848414	0.84[AFR][1000 genomes]
rs7685810	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7698306	0.85[LWK][hapmap];0.89[MKK][hapmap];0.81[YRI][hapmap]
rs9991014	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428770	chr4:130692631-130863832	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1023482	chr4:130737503-130783577	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv523994	chr4:130738623-130774012	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1029003	chr4:130740015-130767559	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1019516	chr4:130754819-130976202	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130758400-130762000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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