Variant report

Variant	rs2852942
Chromosome Location	chr18:45293228-45293229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1107933	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1107934	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1466905	0.81[EUR][1000 genomes]
rs1579118	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1910235	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1995413	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2097175	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2134374	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2653635	0.81[EUR][1000 genomes]
rs2653638	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2653639	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2653641	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2653642	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2653643	0.87[ASN][1000 genomes]
rs2653644	0.87[ASN][1000 genomes]
rs2653645	0.87[ASN][1000 genomes]
rs2653647	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2653648	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2653651	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2653652	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653653	0.85[ASN][1000 genomes]
rs2653654	0.86[ASN][1000 genomes]
rs2653655	0.87[EUR][1000 genomes]
rs2653656	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2852949	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2852950	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2852952	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2852954	0.85[EUR][1000 genomes]
rs2852966	0.81[EUR][1000 genomes]
rs2852967	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2852969	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2852970	0.87[ASN][1000 genomes]
rs877354	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9954192	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45282800-45300600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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