Variant report

Variant	rs2852952
Chromosome Location	chr18:45301608-45301609
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45300398..45302710-chr18:45454784..45457752,2	MCF-7	breast:
2	chr18:45300220..45301757-chr18:45459466..45461739,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175387	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1004765	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1107933	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1107934	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1466905	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1579118	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1604556	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1894150	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1910235	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1945724	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1995413	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2097175	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2134374	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2174028	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653629	0.88[EUR][1000 genomes]
rs2653630	0.86[EUR][1000 genomes]
rs2653632	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2653633	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2653634	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2653635	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653636	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653637	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653638	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2653639	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2653641	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2653642	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2653643	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2653644	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2653645	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2653647	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2653648	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2653651	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2653652	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2653653	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2653654	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2653655	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2653656	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2653657	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2852942	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2852949	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2852950	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2852954	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2852958	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2852960	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2852961	0.85[EUR][1000 genomes]
rs2852966	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2852967	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2852969	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2852970	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62086466	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs877354	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9954192	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv1008833	chr18:45299372-45304141	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45299600-45304600	Weak transcription	Placenta	Placenta
2	chr18:45299600-45306800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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