Variant report

Variant	rs1945724
Chromosome Location	chr18:45308598-45308599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1107933	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1107934	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1466905	0.81[EUR][1000 genomes]
rs1579118	0.85[EUR][1000 genomes]
rs1604556	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1910235	0.83[EUR][1000 genomes]
rs1995413	0.85[EUR][1000 genomes]
rs2097175	0.85[EUR][1000 genomes]
rs2134374	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2653632	0.81[EUR][1000 genomes]
rs2653635	0.82[EUR][1000 genomes]
rs2653637	0.80[EUR][1000 genomes]
rs2653638	0.84[EUR][1000 genomes]
rs2653639	0.84[EUR][1000 genomes]
rs2653641	0.85[EUR][1000 genomes]
rs2653642	0.87[EUR][1000 genomes]
rs2653643	0.80[EUR][1000 genomes]
rs2653644	0.80[EUR][1000 genomes]
rs2653645	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2653647	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2653648	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2653651	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2653652	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2653653	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2653654	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2653655	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2653656	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2653657	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2852949	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2852950	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2852952	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2852954	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2852966	0.81[EUR][1000 genomes]
rs2852967	0.84[EUR][1000 genomes]
rs2852969	0.86[EUR][1000 genomes]
rs62086466	0.80[EUR][1000 genomes]
rs877354	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9954192	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45304600-45309600	Enhancers	Placenta	Placenta
2	chr18:45307000-45308800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr18:45307600-45308800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr18:45308000-45308800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr18:45308000-45309000	Enhancers	Psoas Muscle	Psoas

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