Variant report

Variant	rs2653657
Chromosome Location	chr18:45314528-45314529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1004765	0.83[EUR][1000 genomes]
rs1107933	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1107934	0.89[EUR][1000 genomes]
rs1466905	0.84[EUR][1000 genomes]
rs1579118	0.89[EUR][1000 genomes]
rs1604556	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1910235	0.86[EUR][1000 genomes]
rs1945724	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1995413	0.88[EUR][1000 genomes]
rs2097175	0.87[EUR][1000 genomes]
rs2134374	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2174028	0.83[EUR][1000 genomes]
rs2653629	0.81[EUR][1000 genomes]
rs2653632	0.84[EUR][1000 genomes]
rs2653633	0.82[EUR][1000 genomes]
rs2653634	0.81[EUR][1000 genomes]
rs2653635	0.85[EUR][1000 genomes]
rs2653637	0.84[EUR][1000 genomes]
rs2653638	0.87[EUR][1000 genomes]
rs2653639	0.87[EUR][1000 genomes]
rs2653641	0.88[EUR][1000 genomes]
rs2653642	0.89[EUR][1000 genomes]
rs2653643	0.83[EUR][1000 genomes]
rs2653644	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2653645	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2653647	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2653648	0.95[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2653651	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2653652	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653653	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653654	0.82[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2653655	0.90[EUR][1000 genomes]
rs2653656	0.89[EUR][1000 genomes]
rs2852949	0.89[EUR][1000 genomes]
rs2852950	0.91[CEU][hapmap];0.90[CHB][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2852952	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2852954	0.89[EUR][1000 genomes]
rs2852966	0.84[EUR][1000 genomes]
rs2852967	0.86[EUR][1000 genomes]
rs2852969	0.88[EUR][1000 genomes]
rs2852970	0.83[EUR][1000 genomes]
rs62086466	0.84[EUR][1000 genomes]
rs877354	0.90[CHB][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9954192	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2653657	SNORD58A	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45313600-45320400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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