Variant report

Variant	rs1004765
Chromosome Location	chr18:45274884-45274885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1107933	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1107934	0.91[EUR][1000 genomes]
rs1466905	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1579118	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1894150	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1910235	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1995413	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2097175	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2134374	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2174028	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2653629	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2653630	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2653632	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2653633	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2653634	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2653635	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2653636	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2653637	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2653638	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2653639	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2653641	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2653642	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2653643	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2653644	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653645	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653647	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2653648	0.91[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653651	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653652	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2653653	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2653654	0.86[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653655	0.90[EUR][1000 genomes]
rs2653656	0.91[EUR][1000 genomes]
rs2653657	0.83[EUR][1000 genomes]
rs2852949	0.91[EUR][1000 genomes]
rs2852950	0.95[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2852952	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2852954	0.92[EUR][1000 genomes]
rs2852958	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2852960	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2852961	0.89[EUR][1000 genomes]
rs2852966	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2852967	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2852969	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2852970	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62086466	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs877354	0.89[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9954192	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45274200-45275200	Enhancers	Brain Germinal Matrix	brain
2	chr18:45274600-45275200	Bivalent Enhancer	Fetal Intestine Small	intestine
3	chr18:45274800-45275000	Bivalent Enhancer	Fetal Brain Female	brain
4	chr18:45274800-45275200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr18:45274800-45275200	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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