Variant report

Variant	rs62086466
Chromosome Location	chr18:45275638-45275639
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr18:45074541..45075118-chr18:45275319..45275822,2	MCF-7	breast:
2	chr18:45122198..45123378-chr18:45275151..45276175,11	K562	blood:
3	chr18:45123565..45124325-chr18:45275265..45276130,2	K562	blood:
4	chr18:44741711..44742734-chr18:45275147..45276068,3	K562	blood:
5	chr18:45275263..45275774-chr18:45534555..45535317,2	K562	blood:
6	chr18:45071755..45072717-chr18:45275204..45276121,10	MCF-7	breast:
7	chr18:45135546..45136165-chr18:45275394..45276053,2	MCF-7	breast:
8	chr18:45091609..45092140-chr18:45275305..45276040,2	MCF-7	breast:
9	chr18:44741666..44742588-chr18:45275154..45276303,11	MCF-7	breast:
10	chr18:45072043..45072787-chr18:45275265..45276140,4	MCF-7	breast:
11	chr18:44741349..44742605-chr18:45275245..45276203,15	MCF-7	breast:
12	chr18:45275175..45276095-chr18:45548750..45549670,2	K562	blood:
13	chr18:44576380..44577341-chr18:45275241..45276255,4	K562	blood:
14	chr18:45122068..45123218-chr18:45275265..45276157,11	MCF-7	breast:
15	chr18:44740160..44741714-chr18:45275361..45276865,2	MCF-7	breast:
16	chr18:45121999..45123289-chr18:45275161..45276161,16	MCF-7	breast:
17	chr18:44923783..44924527-chr18:45275630..45276152,2	K562	blood:

No data

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1004765	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1107933	0.86[EUR][1000 genomes]
rs1107934	0.90[EUR][1000 genomes]
rs1466905	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1579118	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1894150	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1910235	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1945724	0.80[EUR][1000 genomes]
rs1995413	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2097175	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2134374	0.93[EUR][1000 genomes]
rs2174028	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2653629	0.92[EUR][1000 genomes]
rs2653630	0.90[EUR][1000 genomes]
rs2653632	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2653633	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2653634	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2653635	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2653636	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2653637	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2653638	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2653639	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2653641	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2653642	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2653643	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2653644	0.88[EUR][1000 genomes]
rs2653645	0.86[EUR][1000 genomes]
rs2653647	0.93[EUR][1000 genomes]
rs2653648	0.90[EUR][1000 genomes]
rs2653651	0.91[EUR][1000 genomes]
rs2653652	0.93[EUR][1000 genomes]
rs2653653	0.88[EUR][1000 genomes]
rs2653654	0.88[EUR][1000 genomes]
rs2653655	0.91[EUR][1000 genomes]
rs2653656	0.90[EUR][1000 genomes]
rs2653657	0.84[EUR][1000 genomes]
rs2852949	0.90[EUR][1000 genomes]
rs2852950	0.93[EUR][1000 genomes]
rs2852952	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2852954	0.93[EUR][1000 genomes]
rs2852958	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2852960	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2852961	0.89[EUR][1000 genomes]
rs2852966	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2852967	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2852969	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2852970	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs877354	0.92[EUR][1000 genomes]
rs9954192	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45275000-45276600	Bivalent Enhancer	Fetal Brain Male	brain
2	chr18:45275200-45275800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:45275200-45276000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr18:45275200-45276000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:45275200-45276000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
6	chr18:45275200-45276000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr18:45275200-45276000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr18:45275200-45276000	Enhancers	Liver	Liver
9	chr18:45275200-45276000	Enhancers	Pancreas	Pancrea
10	chr18:45275200-45276000	Enhancers	NHEK	skin
11	chr18:45275400-45275800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr18:45275400-45276000	Enhancers	Brain Anterior Caudate	brain
13	chr18:45275400-45276000	Active TSS	Brain Cingulate Gyrus	brain
14	chr18:45275600-45275800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
15	chr18:45275600-45275800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr18:45275600-45275800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr18:45275600-45275800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr18:45275600-45276000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr18:45275600-45276000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr18:45275600-45276000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr18:45275600-45276000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
22	chr18:45275600-45276000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr18:45275600-45276000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr18:45275600-45276000	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr18:45275600-45276000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr18:45275600-45276000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr18:45275600-45276000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr18:45275600-45276000	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr18:45275600-45276000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr18:45275600-45276000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr18:45275600-45276000	Enhancers	Adipose Nuclei	Adipose
32	chr18:45275600-45276000	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr18:45275600-45276000	Enhancers	Brain Substantia Nigra	brain
34	chr18:45275600-45276000	Enhancers	Colonic Mucosa	Colon
35	chr18:45275600-45276000	Enhancers	Duodenum Mucosa	Duodenum
36	chr18:45275600-45276000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
37	chr18:45275600-45276000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
38	chr18:45275600-45276000	Bivalent Enhancer	Fetal Stomach	stomach
39	chr18:45275600-45276000	Enhancers	Psoas Muscle	Psoas
40	chr18:45275600-45276000	Enhancers	Rectal Smooth Muscle	rectum
41	chr18:45275600-45276000	Enhancers	Right Atrium	heart
42	chr18:45275600-45276000	Enhancers	Right Ventricle	heart
43	chr18:45275600-45276000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
44	chr18:45275600-45276200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr18:45275600-45276200	Enhancers	Brain Germinal Matrix	brain
46	chr18:45275600-45280400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr18:45275600-45280800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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