Variant report

Variant	rs2653644
Chromosome Location	chr18:45294253-45294254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1004765	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1107933	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1107934	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1466905	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1579118	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1604556	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1894150	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1910235	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1945724	0.80[EUR][1000 genomes]
rs1995413	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2097175	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2134374	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2174028	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653629	0.84[EUR][1000 genomes]
rs2653630	0.90[EUR][1000 genomes]
rs2653632	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653633	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653634	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653635	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2653636	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653637	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653638	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2653639	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2653641	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2653642	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2653643	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2653645	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2653647	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2653648	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2653651	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2653652	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2653653	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2653654	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2653655	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2653656	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2653657	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2852942	0.87[ASN][1000 genomes]
rs2852949	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2852950	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2852952	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2852954	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2852958	0.83[ASN][1000 genomes]
rs2852960	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2852961	0.88[EUR][1000 genomes]
rs2852966	0.88[EUR][1000 genomes]
rs2852967	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2852969	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2852970	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62086466	0.88[EUR][1000 genomes]
rs877354	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9954192	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45282800-45300600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:45293800-45294400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr18:45294000-45294400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:45294000-45294400	Enhancers	GM12878-XiMat	blood
5	chr18:45294000-45294600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr18:45294000-45294600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr18:45294000-45294600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr18:45294000-45294600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links