Variant report

Variant	rs1604556
Chromosome Location	chr18:45311428-45311429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1107933	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1107934	0.83[EUR][1000 genomes]
rs1579118	0.83[EUR][1000 genomes]
rs1894150	0.82[EUR][1000 genomes]
rs1910235	0.80[EUR][1000 genomes]
rs1945724	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1995413	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2097175	0.81[EUR][1000 genomes]
rs2134374	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653630	0.83[EUR][1000 genomes]
rs2653636	0.83[EUR][1000 genomes]
rs2653638	0.81[EUR][1000 genomes]
rs2653639	0.81[EUR][1000 genomes]
rs2653641	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2653642	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2653643	0.90[EUR][1000 genomes]
rs2653644	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2653645	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653647	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2653648	0.91[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2653651	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2653652	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2653653	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2653654	0.87[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2653655	0.84[EUR][1000 genomes]
rs2653656	0.83[EUR][1000 genomes]
rs2653657	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2852949	0.83[EUR][1000 genomes]
rs2852950	0.86[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2852952	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2852954	0.83[EUR][1000 genomes]
rs2852960	0.80[EUR][1000 genomes]
rs2852967	0.80[EUR][1000 genomes]
rs2852969	0.82[EUR][1000 genomes]
rs2852970	0.89[EUR][1000 genomes]
rs877354	0.95[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45311200-45311600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood

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