Variant report

Variant	rs28537468
Chromosome Location	chr15:58431534-58431535
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16977884	1.00[AMR][1000 genomes]
rs16977887	1.00[AMR][1000 genomes]
rs28654758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58936391	1.00[AMR][1000 genomes]
rs73426114	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426126	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426132	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426133	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426140	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426141	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426145	1.00[AMR][1000 genomes]
rs73426154	1.00[AMR][1000 genomes]
rs73426159	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv904263	chr15:58340072-58437346	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv457172	chr15:58417895-58457507	Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv569597	chr15:58417895-58457507	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58428800-58431600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:58428800-58433600	Weak transcription	K562	blood
3	chr15:58429600-58432000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr15:58429600-58436800	Active TSS	Primary hematopoietic stem cells	blood
5	chr15:58429800-58431600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:58430000-58436000	Active TSS	Primary B cells from cord blood	blood
7	chr15:58430400-58431600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr15:58430400-58432400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
9	chr15:58430400-58433200	Active TSS	Liver	Liver
10	chr15:58430600-58431600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr15:58430600-58431600	Enhancers	NHDF-Ad	bronchial
12	chr15:58430600-58432000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr15:58430600-58432000	Enhancers	Adipose Nuclei	Adipose
14	chr15:58430600-58432600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:58430600-58432800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:58430600-58432800	Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr15:58430800-58431600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr15:58430800-58431600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr15:58430800-58431800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr15:58430800-58431800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr15:58430800-58431800	Active TSS	Primary T cells from cord blood	blood
22	chr15:58431000-58431800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr15:58431000-58431800	Weak transcription	HMEC	breast
24	chr15:58431200-58434200	Enhancers	Fetal Lung	lung
25	chr15:58431400-58432000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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