Variant report

Variant	rs73426145
Chromosome Location	chr15:58439605-58439606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr15:58439372-58439818	ECC-1	luminal epithelium:	n/a	chr15:58439533-58439542
2	POLR2A	chr15:58438815-58439769	U87	brain:	n/a	n/a
3	FOXA1	chr15:58439379-58439740	ECC-1	luminal epithelium:	n/a	n/a
4	PAX5	chr15:58439457-58439737	GM12878	blood:	n/a	n/a
5	POLR2A	chr15:58438781-58439769	U87	brain:	n/a	n/a
6	ESR1	chr15:58439456-58439838	ECC-1	luminal epithelium:	n/a	n/a
7	ESR1	chr15:58438937-58439901	ECC-1	luminal epithelium:	n/a	chr15:58439054-58439069
8	KAP1	chr15:58438978-58440015	U2OS	brain:	n/a	chr15:58439002-58439010
9	EBF1	chr15:58439469-58439734	GM12878	blood:	n/a	n/a
10	MYC	chr15:58438919-58439724	NB4	blood:	n/a	n/a
11	POLR2A	chr15:58438724-58439953	U87	brain:	n/a	n/a
12	POLR2A	chr15:58438989-58439674	HL-60	blood:	n/a	n/a
13	MAX	chr15:58438886-58439852	NB4	blood:	n/a	n/a
14	ESR1	chr15:58438884-58439912	ECC-1	luminal epithelium:	n/a	chr15:58439054-58439069
15	TCF12	chr15:58439171-58439937	ECC-1	luminal epithelium:	n/a	chr15:58439533-58439542
16	ESR1	chr15:58439497-58439742	ECC-1	luminal epithelium:	n/a	n/a
17	CEBPB	chr15:58439325-58439623	HepG2	liver:	n/a	chr15:58439465-58439476
18	SPI1	chr15:58438881-58439758	HL-60	blood:	n/a	chr15:58439397-58439406 chr15:58439394-58439407 chr15:58439738-58439751 chr15:58439395-58439408
19	ESR1	chr15:58439491-58439848	ECC-1	luminal epithelium:	n/a	n/a
20	POLR2A	chr15:58438730-58439796	U87	brain:	n/a	n/a
21	ESR1	chr15:58439415-58439924	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
ENSG00000259626	TF binding region
ENSG00000259651	TF binding region
ENSG00000259600	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16977884	1.00[AMR][1000 genomes]
rs16977887	1.00[AMR][1000 genomes]
rs28537468	1.00[AMR][1000 genomes]
rs28654758	1.00[AMR][1000 genomes]
rs58936391	1.00[AMR][1000 genomes]
rs73426114	1.00[AMR][1000 genomes]
rs73426126	1.00[AMR][1000 genomes]
rs73426127	1.00[AMR][1000 genomes]
rs73426132	1.00[AMR][1000 genomes]
rs73426133	1.00[AMR][1000 genomes]
rs73426139	1.00[AMR][1000 genomes]
rs73426140	1.00[AMR][1000 genomes]
rs73426141	1.00[AMR][1000 genomes]
rs73426154	1.00[AMR][1000 genomes]
rs73426159	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv457172	chr15:58417895-58457507	Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv569597	chr15:58417895-58457507	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58433400-58441800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:58433800-58442400	Weak transcription	Aorta	Aorta
3	chr15:58438200-58441800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:58438400-58440000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:58438600-58441600	Enhancers	Fetal Kidney	kidney
6	chr15:58438800-58439800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:58438800-58440000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr15:58438800-58440000	Enhancers	NHDF-Ad	bronchial
9	chr15:58438800-58441600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:58438800-58441600	Enhancers	Liver	Liver
11	chr15:58439000-58439800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:58439000-58439800	Enhancers	Osteobl	bone
13	chr15:58439200-58439800	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr15:58439400-58439800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:58439400-58440200	Weak transcription	Primary B cells from cord blood	blood
16	chr15:58439400-58442400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:58439600-58440000	Active TSS	Primary hematopoietic stem cells	blood
18	chr15:58439600-58440000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr15:58439600-58440600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:58439600-58441400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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