Variant report

Variant	rs73426139
Chromosome Location	chr15:58432056-58432057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr15:58431902-58432210	MCF10A-Er-Src	breast:	n/a	chr15:58432057-58432065
2	STAT3	chr15:58431891-58432470	MCF10A-Er-Src	breast:	n/a	chr15:58432057-58432065
3	FOS	chr15:58431897-58432536	MCF10A-Er-Src	breast:	n/a	chr15:58432317-58432325 chr15:58432315-58432327 chr15:58432313-58432324
4	FOS	chr15:58431904-58432471	MCF10A-Er-Src	breast:	n/a	chr15:58432317-58432325 chr15:58432315-58432327 chr15:58432313-58432324
5	POLR2A	chr15:58431975-58432268	K562	blood:	n/a	n/a
6	STAT3	chr15:58431929-58432154	MCF10A-Er-Src	breast:	n/a	chr15:58432057-58432065
7	FOS	chr15:58431951-58432523	MCF10A-Er-Src	breast:	n/a	chr15:58432317-58432325 chr15:58432315-58432327 chr15:58432313-58432324

Variant related genes	Relation type
ALDH1A2	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16977884	1.00[AMR][1000 genomes]
rs16977887	1.00[AMR][1000 genomes]
rs28537468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58936391	1.00[AMR][1000 genomes]
rs73426114	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426126	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426132	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426133	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426140	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426141	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426145	1.00[AMR][1000 genomes]
rs73426154	1.00[AMR][1000 genomes]
rs73426159	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv904263	chr15:58340072-58437346	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv457172	chr15:58417895-58457507	Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv569597	chr15:58417895-58457507	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58428800-58433600	Weak transcription	K562	blood
2	chr15:58429600-58436800	Active TSS	Primary hematopoietic stem cells	blood
3	chr15:58430000-58436000	Active TSS	Primary B cells from cord blood	blood
4	chr15:58430400-58432400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
5	chr15:58430400-58433200	Active TSS	Liver	Liver
6	chr15:58430600-58432600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:58430600-58432800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:58430600-58432800	Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr15:58431200-58434200	Enhancers	Fetal Lung	lung
10	chr15:58431600-58432600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:58431600-58432600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr15:58431800-58432400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr15:58431800-58432400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr15:58431800-58432400	Enhancers	HMEC	breast
15	chr15:58432000-58432200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:58432000-58432200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:58432000-58432200	Active TSS	NHDF-Ad	bronchial
18	chr15:58432000-58432400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:58432000-58432400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:58432000-58432400	Weak transcription	Adipose Nuclei	Adipose
21	chr15:58432000-58432600	Active TSS	Monocytes-CD14+_RO01746	blood
22	chr15:58432000-58433200	Enhancers	Fetal Muscle Leg	muscle

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