Variant report

Variant	rs28540604
Chromosome Location	chr4:173952354-173952355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10005134	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10019125	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708748	0.81[EUR][1000 genomes]
rs72708762	0.95[EUR][1000 genomes]
rs72708764	1.00[EUR][1000 genomes]
rs72708766	0.95[EUR][1000 genomes]
rs72708768	0.95[EUR][1000 genomes]
rs72708769	0.95[EUR][1000 genomes]
rs72708772	1.00[EUR][1000 genomes]
rs72708774	0.95[EUR][1000 genomes]
rs72708775	0.95[EUR][1000 genomes]
rs72708780	0.95[EUR][1000 genomes]
rs72708781	0.95[EUR][1000 genomes]
rs72708785	0.95[EUR][1000 genomes]
rs7659038	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173944600-173955600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:173950400-173959400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:173950800-173952800	Weak transcription	Stomach Mucosa	stomach
4	chr4:173950800-173958000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:173951200-173960400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:173951600-173959200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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