Variant report

Variant	rs7659038
Chromosome Location	chr4:173944939-173944940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10005134	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10019125	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28540604	1.00[EUR][1000 genomes]
rs72708748	0.81[EUR][1000 genomes]
rs72708762	0.95[EUR][1000 genomes]
rs72708764	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708766	0.95[EUR][1000 genomes]
rs72708768	0.95[EUR][1000 genomes]
rs72708769	0.95[EUR][1000 genomes]
rs72708772	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708774	0.95[EUR][1000 genomes]
rs72708775	0.95[EUR][1000 genomes]
rs72708780	0.95[EUR][1000 genomes]
rs72708781	0.95[EUR][1000 genomes]
rs72708785	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173936400-173945000	Weak transcription	HSMM	muscle
2	chr4:173941400-173950000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:173942600-173949400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:173942800-173946000	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:173942800-173948800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:173942800-173949400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:173942800-173950000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:173943000-173945800	Weak transcription	Fetal Thymus	thymus
9	chr4:173944600-173946200	Enhancers	Hela-S3	cervix
10	chr4:173944600-173955600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:173944800-173945800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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