Variant report

Variant	rs72708775
Chromosome Location	chr4:173949707-173949708
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10005134	0.95[EUR][1000 genomes]
rs10019125	0.95[EUR][1000 genomes]
rs28540604	0.95[EUR][1000 genomes]
rs6811671	0.81[EUR][1000 genomes]
rs72708748	0.85[EUR][1000 genomes]
rs72708762	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708764	0.95[EUR][1000 genomes]
rs72708766	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708768	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708769	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708772	0.95[EUR][1000 genomes]
rs72708774	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708781	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7659038	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173941400-173950000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:173942800-173950000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:173944600-173955600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:173949400-173949800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr4:173949400-173950800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:173949400-173951600	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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