Variant report

Variant	rs28542234
Chromosome Location	chr4:119847772-119847773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10021334	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11098462	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17050270	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17050285	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57021447	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62326792	0.86[ASN][1000 genomes]
rs62326836	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62326841	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7349616	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs736692	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs736693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs736694	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654417	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7661292	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676506	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119838200-119851600	Enhancers	Rectal Smooth Muscle	rectum
2	chr4:119841000-119858400	Weak transcription	Psoas Muscle	Psoas
3	chr4:119842600-119861800	Weak transcription	Right Ventricle	heart
4	chr4:119843400-119848600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:119844200-119848400	Enhancers	Ovary	ovary
6	chr4:119845000-119851800	Enhancers	Colon Smooth Muscle	Colon
7	chr4:119845200-119848400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr4:119845600-119850400	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr4:119846000-119849800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr4:119846800-119847800	Enhancers	Stomach Smooth Muscle	stomach
11	chr4:119847200-119848200	Enhancers	Small Intestine	intestine
12	chr4:119847400-119847800	Weak transcription	Right Atrium	heart
13	chr4:119847400-119849000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:119847400-119849000	Weak transcription	Aorta	Aorta
15	chr4:119847400-119849200	Weak transcription	Fetal Stomach	stomach
16	chr4:119847400-119861800	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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