Variant report

Variant	rs62326836
Chromosome Location	chr4:119841485-119841486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10021334	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11098462	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17050270	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17050285	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28542234	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57021447	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62326792	0.86[ASN][1000 genomes]
rs62326841	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7349616	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs736692	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs736693	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs736694	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654417	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7661292	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676506	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119831600-119847200	Weak transcription	Right Atrium	heart
2	chr4:119833000-119845600	Weak transcription	Aorta	Aorta
3	chr4:119836600-119841600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:119837600-119841800	Enhancers	Osteobl	bone
5	chr4:119838200-119851600	Enhancers	Rectal Smooth Muscle	rectum
6	chr4:119838400-119842000	Weak transcription	Left Ventricle	heart
7	chr4:119839600-119841800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:119839600-119843400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr4:119839800-119841600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:119839800-119841800	Enhancers	NHDF-Ad	bronchial
11	chr4:119839800-119847200	Weak transcription	Small Intestine	intestine
12	chr4:119840000-119841600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr4:119840000-119841800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:119840000-119841800	Enhancers	NH-A	brain
15	chr4:119840000-119842200	Weak transcription	Fetal Kidney	kidney
16	chr4:119840000-119845000	Weak transcription	NHEK	skin
17	chr4:119840200-119843400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr4:119840200-119843600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr4:119840200-119843600	Enhancers	Fetal Stomach	stomach
20	chr4:119840200-119844000	Enhancers	Colon Smooth Muscle	Colon
21	chr4:119840400-119841800	Weak transcription	Brain Anterior Caudate	brain
22	chr4:119840600-119841800	Enhancers	Fetal Heart	heart
23	chr4:119841000-119858400	Weak transcription	Psoas Muscle	Psoas
24	chr4:119841200-119842200	Weak transcription	Ovary	ovary
25	chr4:119841200-119842200	Weak transcription	Right Ventricle	heart
26	chr4:119841400-119841600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:119841400-119843000	Enhancers	Stomach Smooth Muscle	stomach
28	chr4:119841400-119843000	Weak transcription	NHLF	lung
29	chr4:119841400-119845600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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