Variant report

Variant	rs28544060
Chromosome Location	chr4:74676214-74676215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10033377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849925	1.00[EUR][1000 genomes]
rs1951237	1.00[EUR][1000 genomes]
rs2227525	1.00[EUR][1000 genomes]
rs2227532	1.00[EUR][1000 genomes]
rs2227545	1.00[EUR][1000 genomes]
rs28560265	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28707294	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28879705	1.00[EUR][1000 genomes]
rs55648028	1.00[EUR][1000 genomes]
rs59569175	1.00[EUR][1000 genomes]
rs6840833	1.00[EUR][1000 genomes]
rs6847987	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6853880	1.00[EUR][1000 genomes]
rs73827899	1.00[EUR][1000 genomes]
rs73827900	1.00[EUR][1000 genomes]
rs7657469	1.00[EUR][1000 genomes]
rs7668660	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7673632	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1005231	chr4:74555497-74680079	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74675400-74678000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:74675600-74676600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:74675600-74676600	Enhancers	Dnd41	blood
4	chr4:74676200-74682200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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