Variant report

Variant	rs28707294
Chromosome Location	chr4:74688842-74688843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10033377	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849925	1.00[EUR][1000 genomes]
rs1951237	1.00[EUR][1000 genomes]
rs2227525	1.00[EUR][1000 genomes]
rs2227532	1.00[EUR][1000 genomes]
rs2227545	1.00[EUR][1000 genomes]
rs28544060	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28560265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28879705	1.00[EUR][1000 genomes]
rs55648028	1.00[EUR][1000 genomes]
rs59569175	1.00[EUR][1000 genomes]
rs6840833	1.00[EUR][1000 genomes]
rs6847987	1.00[EUR][1000 genomes]
rs6853880	1.00[EUR][1000 genomes]
rs73827899	1.00[EUR][1000 genomes]
rs73827900	1.00[EUR][1000 genomes]
rs7657469	1.00[EUR][1000 genomes]
rs7668660	1.00[EUR][1000 genomes]
rs7673632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74684800-74693000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr4:74686800-74689800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:74688000-74689200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:74688000-74689800	Enhancers	HMEC	breast
5	chr4:74688200-74689800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr4:74688200-74690000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:74688200-74694400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:74688400-74689800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:74688800-74689200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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