Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:74636966..74638791-chr4:74640167..74642281,2	K562	blood:
2	chr4:74605839..74608287-chr4:74637103..74638834,2	K562	blood:
3	chr4:74612735..74615091-chr4:74635829..74638388,2	K562	blood:

Variant related genes	Relation type
ENSG00000169429	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10033377	1.00[EUR][1000 genomes]
rs16849925	1.00[EUR][1000 genomes]
rs1951237	1.00[EUR][1000 genomes]
rs2227525	1.00[EUR][1000 genomes]
rs2227532	1.00[EUR][1000 genomes]
rs2227545	1.00[EUR][1000 genomes]
rs28544060	1.00[EUR][1000 genomes]
rs28560265	1.00[EUR][1000 genomes]
rs28707294	1.00[EUR][1000 genomes]
rs28879705	1.00[EUR][1000 genomes]
rs55648028	1.00[EUR][1000 genomes]
rs6840833	1.00[EUR][1000 genomes]
rs6847987	1.00[EUR][1000 genomes]
rs6853880	1.00[EUR][1000 genomes]
rs72867182	0.94[AFR][1000 genomes]
rs73827899	1.00[EUR][1000 genomes]
rs73827900	1.00[EUR][1000 genomes]
rs7657469	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7668660	1.00[EUR][1000 genomes]
rs7673632	1.00[EUR][1000 genomes]
rs7699027	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1005231	chr4:74555497-74680079	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74636000-74637800	Enhancers	Duodenum Mucosa	Duodenum
2	chr4:74636000-74638200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:74636400-74637800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:74636400-74638000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:74636400-74641600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:74637000-74637400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr4:74637000-74637600	Weak transcription	Small Intestine	intestine
8	chr4:74637200-74641400	Weak transcription	Liver	Liver
9	chr4:74637200-74641400	Weak transcription	Stomach Mucosa	stomach
10	chr4:74637200-74642000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr4:74637200-74646400	Weak transcription	Rectal Mucosa Donor 31	rectum

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