Variant report

Variant	rs28546590
Chromosome Location	chr4:106895056-106895057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10001634	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10002265	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10021819	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11722309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11733075	1.00[EUR][1000 genomes]
rs11733103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11735326	1.00[AMR][1000 genomes]
rs28413994	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28421844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28457630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28488638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28602429	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28627523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28666673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28735827	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9990521	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106885400-106909800	Weak transcription	Aorta	Aorta
2	chr4:106891000-106898600	Weak transcription	Fetal Intestine Large	intestine
3	chr4:106891400-106895400	Weak transcription	Psoas Muscle	Psoas
4	chr4:106891800-106897800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:106892400-106900000	Weak transcription	HSMMtube	muscle
6	chr4:106893200-106897200	Weak transcription	Fetal Intestine Small	intestine
7	chr4:106893600-106895200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:106893600-106895400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:106893800-106895400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:106893800-106895600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:106894000-106895200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr4:106894000-106895600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr4:106894200-106895600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr4:106894600-106895200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr4:106894600-106895200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:106894800-106895200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr4:106894800-106895600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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