Variant report

Variant	rs28421844
Chromosome Location	chr4:106893706-106893707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106884758..106886311-chr4:106892717..106894485,2	K562	blood:
2	chr4:106893048..106895457-chr4:106896581..106900704,4	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10001634	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10002265	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10021819	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11722309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11733075	1.00[EUR][1000 genomes]
rs11733103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11735326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28413994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28457630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28488638	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28546590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28602429	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28627523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28666673	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28735827	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72956798	0.82[AFR][1000 genomes]
rs72956799	0.82[AFR][1000 genomes]
rs72958805	0.86[AFR][1000 genomes]
rs72958806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958808	0.84[AFR][1000 genomes]
rs72958813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958815	0.86[AFR][1000 genomes]
rs9990521	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106885400-106909800	Weak transcription	Aorta	Aorta
2	chr4:106885600-106894000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:106886600-106894600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:106888600-106893800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:106888600-106894000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:106888800-106894200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:106889200-106893800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:106889200-106894000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:106889400-106893800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:106889400-106894000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr4:106890400-106893800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:106890600-106894200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:106890600-106894200	Weak transcription	Pancreas	Pancrea
14	chr4:106891000-106893800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:106891000-106898600	Weak transcription	Fetal Intestine Large	intestine
16	chr4:106891400-106895400	Weak transcription	Psoas Muscle	Psoas
17	chr4:106891800-106897800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:106892400-106900000	Weak transcription	HSMMtube	muscle
19	chr4:106893200-106897200	Weak transcription	Fetal Intestine Small	intestine
20	chr4:106893600-106894000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr4:106893600-106894400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr4:106893600-106895200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr4:106893600-106895400	Enhancers	HUES64 Cell Line	embryonic stem cell

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