Variant report
| Variant | rs28554027 |
|---|---|
| Chromosome Location | chr5:75336476-75336477 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10038280 | 0.86[EUR][1000 genomes] |
| rs10038757 | 0.88[EUR][1000 genomes] |
| rs10043369 | 0.87[EUR][1000 genomes] |
| rs10050813 | 0.86[EUR][1000 genomes] |
| rs10054931 | 0.87[EUR][1000 genomes] |
| rs10063621 | 0.87[EUR][1000 genomes] |
| rs10064145 | 0.87[EUR][1000 genomes] |
| rs10065114 | 0.86[EUR][1000 genomes] |
| rs10474460 | 0.86[EUR][1000 genomes] |
| rs12513411 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12513447 | 0.95[EUR][1000 genomes] |
| rs12656979 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1553311 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17673786 | 0.86[EUR][1000 genomes] |
| rs17746749 | 0.87[EUR][1000 genomes] |
| rs1862520 | 0.86[EUR][1000 genomes] |
| rs6453199 | 0.86[EUR][1000 genomes] |
| rs7356555 | 0.90[ASN][1000 genomes] |
| rs7448740 | 0.87[EUR][1000 genomes] |
| rs767590 | 0.87[EUR][1000 genomes] |
| rs7700761 | 0.87[EUR][1000 genomes] |
| rs7702044 | 0.86[EUR][1000 genomes] |
| rs7711218 | 0.86[EUR][1000 genomes] |
| rs7712198 | 0.87[EUR][1000 genomes] |
| rs7725280 | 0.87[EUR][1000 genomes] |
| rs9293666 | 0.87[EUR][1000 genomes] |
| rs9293667 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1027368 | chr5:74759999-75663712 | Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
| 2 | nsv518475 | chr5:74863041-75411804 | Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:75336400-75336800 | Enhancers | Rectal Mucosa Donor 31 | rectum |
