Variant report

Variant	rs1553311
Chromosome Location	chr5:75320929-75320930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10038280	0.87[EUR][1000 genomes]
rs10038757	0.89[EUR][1000 genomes]
rs10043369	0.89[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs10050813	0.87[EUR][1000 genomes]
rs10051950	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs10054931	0.88[ASW][hapmap];0.89[GIH][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.87[EUR][1000 genomes]
rs10060618	0.89[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]
rs10063621	0.94[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs10064145	1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs10065114	0.89[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs10067484	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs10074384	0.88[CEU][hapmap]
rs10474460	0.87[EUR][1000 genomes]
rs12513411	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12513447	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12656979	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12697846	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs13160383	0.80[ASW][hapmap]
rs17673786	0.85[CHD][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs17746749	0.88[EUR][1000 genomes]
rs1862519	0.94[CEU][hapmap];1.00[YRI][hapmap]
rs1862520	0.88[EUR][1000 genomes]
rs28554027	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6453199	0.89[GIH][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.87[EUR][1000 genomes]
rs7448740	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs767590	0.88[EUR][1000 genomes]
rs7700761	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs7702044	0.82[CEU][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs7711218	0.88[EUR][1000 genomes]
rs7712198	0.83[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs7725280	0.82[CEU][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs9293665	0.83[CEU][hapmap];1.00[TSI][hapmap]
rs9293666	0.87[EUR][1000 genomes]
rs9293667	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv518475	chr5:74863041-75411804	Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75320400-75322000	Enhancers	Fetal Brain Female	brain
2	chr5:75320600-75322000	Enhancers	Fetal Brain Male	brain

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